INNUca
latest
Contents:
generator package
nextflow_generator module
templates package
INNUca
Docs
»
Index
Edit on GitHub
Index
_
|
A
|
B
|
C
|
D
|
F
|
G
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
_
_build_header() (nextflow_generator.NextflowGenerator method)
_check_pipeline_requirements() (nextflow_generator.NextflowGenerator method)
_context (generator.Process.Process attribute)
_input_channel (generator.Process.Process attribute)
_main_in_str (generator.Process.Process attribute)
_main_out_str (generator.Process.Process attribute)
_output_channel (generator.Process.Process attribute)
_set_channels() (nextflow_generator.NextflowGenerator method)
_set_main_channel_name() (generator.Process.Process method)
_set_secondary_channels() (nextflow_generator.NextflowGenerator method)
_set_status_channels() (nextflow_generator.NextflowGenerator method)
_set_template() (generator.Process.Process method)
_template_path (generator.Process.Process attribute)
A
Abricate (class in generator.Process)
accepted_types (generator.Process.Process attribute)
AssemblyMapping (class in generator.Process)
B
build() (nextflow_generator.NextflowGenerator method)
C
ChannelError
CheckCoverage (class in generator.Process)
Chewbbaca (class in generator.Process)
copy_project() (in module nextflow_generator)
D
dependencies (generator.Process.Process attribute)
F
FastQC (class in generator.Process)
FastqcTrimmomatic (class in generator.Process)
forks (generator.Process.Process attribute)
G
generator (module)
generator.HeaderSkeleton (module)
generator.Process (module)
get_args() (in module nextflow_generator)
get_tuples() (in module nextflow_generator)
I
ignore_pid (generator.Process.Process attribute)
ignore_type (generator.Process.Process attribute)
Init (class in generator.Process)
input_type (generator.Process.Process attribute)
IntegrityCoverage (class in generator.Process)
L
link_end (generator.Process.Process attribute)
link_start (generator.Process.Process attribute)
M
main() (in module nextflow_generator)
Mlst (class in generator.Process)
N
nextflow_generator (module)
NextflowGenerator (class in nextflow_generator)
nf_file (nextflow_generator.NextflowGenerator attribute)
O
output_type (generator.Process.Process attribute)
P
PathoTyping (class in generator.Process)
pid (generator.Process.Process attribute)
Pilon (class in generator.Process)
Process (class in generator.Process)
process_id (generator.Process.Process attribute)
process_map (nextflow_generator.NextflowGenerator attribute)
ProcessError
processes (nextflow_generator.NextflowGenerator attribute)
ProcessSpades (class in generator.Process)
Prokka (class in generator.Process)
ptype (generator.Process.Process attribute)
R
render() (generator.Process.Process static method)
S
secondary_channels (nextflow_generator.NextflowGenerator attribute)
SeqTyping (class in generator.Process)
set_channels() (generator.Process.Process method)
set_secondary_channel() (generator.Process.Init method)
(generator.Process.Process method)
set_status_channels() (generator.Process.Status method)
Spades (class in generator.Process)
Status (class in generator.Process)
status_channels (generator.Process.FastQC attribute)
(generator.Process.Process attribute)
(nextflow_generator.NextflowGenerator attribute)
status_strs (generator.Process.Process attribute)
StatusCompiler (class in generator.Process)
T
template (generator.Process.Process attribute)
(nextflow_generator.NextflowGenerator attribute)
template_str (generator.Process.Process attribute)
TraceCompiler (class in generator.Process)
Trimmomatic (class in generator.Process)
Read the Docs
v: latest
Versions
latest
Downloads
pdf
htmlzip
epub
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.